SNP Profiles of SPEC 54 /1 View Data

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_Input profile	GG	TT	AA	GT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
1._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
2._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
3._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
4._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
5._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
6._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
7._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
8._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
9._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
10._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
11._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
12._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
13._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
14._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
15._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
16._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
17._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	_
18._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	_
19._RUQ_50	_	_	AA	_	_	_	_	AA	_	_	_	_	AC	_
20._GC-05-063-2-14	GG	TT	AA	TT	CT	AA	CC	AA	TT	AA	GG	AA	CC	TT
21._SPEC_54_/1	GG	TT	AA	TT	CT	AA	CC	AA	TT	AA	GG	AA	CC	TT
22._RUQ_50	_	_	AA	TT	CC	AA	CC	AA	TT	AA	_	AA	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
1._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
2._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
3._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
4._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
5._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
6._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
7._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
8._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
9._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
10._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
11._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
12._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
13._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
14._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
15._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
16._GC-05-162-4-15	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
17._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
18._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
19._RUQ_50	_	GG	AA	_	AA	GG	GG	_	_	_	_	_	AA	_
20._GC-05-063-2-14	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
21._SPEC_54_/1	TT	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC
22._RUQ_50	TT	GG	AA	CC	_	GG	GG	CC	_	_	_	_	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	TT	CC	TT	TT	CC	TT	CT	CC	AG	CC	X_X	X_X
1._SPEC_54_/1	GG	AA	TT	CC	TT	TT	CC	TT	CT	CC	AA	CC	X_X	X_X
2._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	CC	TT	CT	CC	AA	CC	X_X	X_X
3._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
4._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
5._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
6._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
7._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
8._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
9._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
10._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
11._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
12._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
13._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
14._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
15._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
16._GC-05-162-4-15	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
17._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
18._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
19._RUQ_50	GG	_	TT	_	TT	_	_	_	_	CC	_	_	X_X	X_X
20._GC-05-063-2-14	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
21._SPEC_54_/1	GG	AA	TT	CC	TT	TT	_	TT	CT	CC	AA	CC	X_X	X_X
22._RUQ_50	_	_	_	_	TT	_	_	_	CT	CC	AA	_	X_X	X_X

Input profile: SPEC_54_/1 RUQ_50

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._SPEC_54_/1

97.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 5

Dapeng Zhang, 2016

2._SPEC_54_/1 GC-05-162-4-15

97.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

3._SPEC_54_/1

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 4

Dapeng Zhang, 2016

4._SPEC_54_/1 GC-05-162-4-15

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._SPEC_54_/1 GC-05-162-4-15

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._SPEC_54_/1 GC-05-162-4-15

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

7._SPEC_54_/1 GC-05-063-2-14

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._SPEC_54_/1 GC-05-063-2-14

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

9._SPEC_54_/1 GC-05-063-2-14

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

10._SPEC_54_/1

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 1 > FP

Dapeng Zhang, 2016

11._SPEC_54_/1

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 3

Dapeng Zhang, 2016

12._SPEC_54_/1

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 2

Dapeng Zhang, 2016

13._SPEC_54_/1

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 4 > FP

Dapeng Zhang, 2016

14._SPEC_54_/1

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 3 > FP

Dapeng Zhang, 2016

15._SPEC_54_/1

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 2 > FP

Dapeng Zhang, 2016

16._SPEC_54_/1 GC-05-162-4-15

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

17._SPEC_54_/1 GC-05-063-2-14

97.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

18._SPEC_54_/1

97.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 1 > FP

Dapeng Zhang, 2016

19._SPEC_54_/1 RUQ_50

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

20._SPEC_54_/1 GC-05-063-2-14

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

21._SPEC_54_/1

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

22._SPEC_54_/1 RUQ_50

95.8 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520